imagedata
3.4.0
Contents:
User Guide
Developer Documentation
imagedata
Index
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Z
A
AbstractArchive (class in imagedata.archives.abstractarchive)
(class in src.imagedata.archives.abstractarchive)
AbstractPlugin (class in imagedata.formats.abstractplugin)
(class in src.imagedata.formats.abstractplugin)
AbstractTransport (class in imagedata.transports.abstracttransport)
(class in src.imagedata.transports.abstracttransport)
accessionNumber (imagedata.Series property)
(src.imagedata.series.Series property)
add_argparse_options() (in module src.imagedata.cmdline)
add_geometry() (imagedata.header.Header method)
(src.imagedata.header.Header method)
add_localfile() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
add_template() (imagedata.header.Header method)
(src.imagedata.header.Header method)
advance_data() (imagedata.viewer.Viewer method)
(src.imagedata.viewer.Viewer method)
align() (imagedata.Series method)
(src.imagedata.series.Series method)
ArchivePluginNotFound
AssociationFailed
,
[1]
AssociationNotEstablished
,
[1]
authors (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.formats.abstractplugin.AbstractPlugin property)
(imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
(src.imagedata.collections.Cohort attribute)
(src.imagedata.collections.Patient attribute)
(src.imagedata.collections.Study attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin property)
(src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
(src.imagedata.formats.itkplugin.ITKPlugin attribute)
(src.imagedata.formats.matplugin.MatPlugin attribute)
(src.imagedata.formats.niftiplugin.NiftiPlugin attribute)
(src.imagedata.series.Series attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
auto_sort() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
axes (imagedata.Series property)
(src.imagedata.series.Series property)
Axis (class in src.imagedata.axis)
B
basename() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
bodyPartExamined (imagedata.Series property)
(src.imagedata.series.Series property)
boundary_fill4() (in module src.imagedata.apps.Siemens.draw_antialiased)
build_info() (in module src.imagedata.viewer)
bvalues (imagedata.Series property)
(src.imagedata.series.Series property)
C
calculate_clip_range() (src.imagedata.series.Series method)
calculator() (in module src.imagedata.image_data)
CannotSort
ClinicalTrialSubject (class in src.imagedata.collections)
close() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.WriteFileIO method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(imagedata.transports.abstracttransport.AbstractTransport method)
(imagedata.transports.dicomtransport.DicomTransport method)
(imagedata.transports.filetransport.FileTransport method)
(imagedata.transports.xnattransport.XnatTransport method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.WriteFileIO method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.transports.abstracttransport.AbstractTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.filetransport.FileTransport method)
(src.imagedata.transports.xnattransport.XnatTransport method)
Cohort (class in imagedata)
(class in src.imagedata.collections)
color (imagedata.Series property)
(src.imagedata.series.Series property)
colormap (src.imagedata.series.Series property)
colormap_label (imagedata.Series property)
(src.imagedata.series.Series property)
colormap_norm (src.imagedata.series.Series property)
columns (imagedata.Series property)
(src.imagedata.series.Series property)
CommaSepAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
compare_axes() (in module tests.compare_headers)
compare_geometry_headers() (in module tests.compare_headers)
compare_headers() (in module tests.compare_headers)
compare_optional() (in module tests.compare_headers)
compare_pydicom() (in module tests.compare_headers)
compare_template_headers() (in module tests.compare_headers)
connect() (src.imagedata.viewer.Viewer method)
connect_draw() (src.imagedata.viewer.Viewer method)
construct_basic_dicom() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
construct_dicom() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
construct_pixel_array() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
conversion() (in module src.imagedata.image_data)
correct_acqtimes_for_dynamic_series() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
create_affine() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
create_canvas() (src.imagedata.apps.Siemens.ROI.ROI static method)
D
default_layout() (in module src.imagedata.viewer)
DependencyError
,
[1]
,
[2]
,
[3]
description (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.formats.abstractplugin.AbstractPlugin property)
(imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
(src.imagedata.collections.Cohort attribute)
(src.imagedata.collections.Patient attribute)
(src.imagedata.collections.Study attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin property)
(src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
(src.imagedata.formats.itkplugin.ITKPlugin attribute)
(src.imagedata.formats.matplugin.MatPlugin attribute)
(src.imagedata.formats.niftiplugin.NiftiPlugin attribute)
(src.imagedata.series.Series attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
DICOMPlugin (class in imagedata.formats.dicomplugin)
(class in src.imagedata.formats.dicomplugin)
dicomTemplate (imagedata.Series property)
(src.imagedata.series.Series property)
DicomTransport (class in imagedata.transports.dicomtransport)
(class in src.imagedata.transports.dicomtransport)
DictAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
disconnect() (src.imagedata.viewer.Viewer method)
disconnect_draw() (src.imagedata.viewer.Viewer method)
DoNotSetSlicesError
draw_circle_mask() (in module src.imagedata.apps.Siemens.draw_antialiased)
draw_ellipse_mask() (in module src.imagedata.apps.Siemens.draw_antialiased)
draw_line_mask() (in module src.imagedata.apps.Siemens.draw_antialiased)
draw_polygon_mask() (in module src.imagedata.apps.Siemens.draw_antialiased)
draw_roi_on_canvas() (src.imagedata.apps.Siemens.ROI.EllipseROI method)
(src.imagedata.apps.Siemens.ROI.PolygonROI method)
(src.imagedata.apps.Siemens.ROI.ROI method)
draw_roi_on_numpy() (src.imagedata.apps.Siemens.ROI.ROI method)
DtypeAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
dump() (in module src.imagedata.image_data)
E
EllipseROI (class in src.imagedata.apps.Siemens.ROI)
empty_ds() (src.imagedata.header.Header method)
EmptyImageError
end_window_level() (src.imagedata.viewer.Viewer method)
evidence2roi() (in module src.imagedata.apps.Siemens.evidence2mask)
extractDicomAttributes() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
F
FileAlreadyExistsError
FilesGivenForMultipleURLs
,
[1]
FilesystemArchive (class in imagedata.archives.filesystemarchive)
(class in src.imagedata.archives.filesystemarchive)
FileTransport (class in imagedata.transports.filetransport)
(class in src.imagedata.transports.filetransport)
find_axis() (imagedata.header.Header method)
(imagedata.Series method)
(src.imagedata.header.Header method)
(src.imagedata.series.Series method)
find_image_from_event() (src.imagedata.viewer.Viewer method)
find_mimetype_plugin() (in module src.imagedata.archives)
find_plugin() (in module src.imagedata.archives)
(in module src.imagedata.formats)
find_viewport_from_event() (src.imagedata.viewer.Viewer method)
flood_fill4() (in module src.imagedata.apps.Siemens.draw_antialiased)
FormatPluginNotFound
fpart() (in module src.imagedata.apps.Siemens.draw_antialiased)
frameOfReferenceUID (imagedata.Series property)
(src.imagedata.series.Series property)
FunctionNotSupported
fuse_mask() (imagedata.Series method)
(src.imagedata.series.Series method)
G
GeneralEquipment (class in src.imagedata.collections)
get_b_value() (in module imagedata.apps.diffusion)
(in module src.imagedata.apps.diffusion)
get_dicom_files() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
get_g_vectors() (in module imagedata.apps.diffusion)
(in module src.imagedata.apps.diffusion)
get_hostid() (in module src.imagedata.formats.dicomlib.uid)
get_image_from_numpy() (imagedata.formats.itkplugin.ITKPlugin method)
(src.imagedata.formats.itkplugin.ITKPlugin method)
get_level() (in module src.imagedata.viewer)
get_plugins_list() (in module src.imagedata.formats)
get_points_cm() (src.imagedata.apps.Siemens.ROI.EllipseROI method)
(src.imagedata.apps.Siemens.ROI.PolygonROI method)
(src.imagedata.apps.Siemens.ROI.ROI method)
get_points_matrix() (src.imagedata.apps.Siemens.ROI.EllipseROI method)
(src.imagedata.apps.Siemens.ROI.PolygonROI method)
(src.imagedata.apps.Siemens.ROI.ROI method)
get_roi() (imagedata.Series method)
(imagedata.viewer.Viewer method)
(src.imagedata.series.Series method)
(src.imagedata.viewer.Viewer method)
get_roi_mask() (imagedata.Series method)
(src.imagedata.series.Series method)
get_size() (in module src.imagedata.formats)
get_slice_axis() (imagedata.Series method)
(src.imagedata.series.Series method)
get_tag_axis() (imagedata.Series method)
(src.imagedata.series.Series method)
get_timepoint() (src.imagedata.apps.Siemens.ROI.ROI method)
get_transformation_components_xyz() (imagedata.Series method)
(src.imagedata.series.Series method)
get_uid() (in module src.imagedata.formats.dicomlib.uid)
get_uid_for_storage_class() (in module src.imagedata.formats.dicomlib.uid)
get_window_level() (in module src.imagedata.viewer)
getDicomAttribute() (imagedata.formats.dicomplugin.DICOMPlugin method)
(imagedata.Series method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.series.Series method)
getmembers() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
getnames() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
getOriginForSlice() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
getPositionForVoxel() (imagedata.formats.abstractplugin.AbstractPlugin method)
(imagedata.Series method)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.series.Series method)
getTimeline() (imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
getVoxelForPosition() (imagedata.formats.abstractplugin.AbstractPlugin method)
(imagedata.Series method)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.series.Series method)
grid_from_roi() (in module src.imagedata.viewer)
H
handle_store() (tests.test_transport_dicomtransport.TestDicomTransport static method)
Header (class in imagedata.header)
(class in src.imagedata.header)
I
image_list() (in module src.imagedata.image_data)
imagedata.apps.diffusion
module
imagedata.archives.abstractarchive
module
imagedata.archives.filesystemarchive
module
imagedata.archives.zipfilearchive
module
imagedata.axis
module
imagedata.cmdline
module
imagedata.formats.abstractplugin
module
imagedata.formats.dicomplugin
module
imagedata.formats.itkplugin
module
imagedata.formats.matplugin
module
imagedata.formats.niftiplugin
module
imagedata.header
module
imagedata.readdata
module
imagedata.transports.abstracttransport
module
imagedata.transports.dicomtransport
module
imagedata.transports.filetransport
module
imagedata.transports.xnattransport
module
imagePositions (imagedata.Series property)
(src.imagedata.series.Series property)
imageType (imagedata.Series property)
(src.imagedata.series.Series property)
ImageTypeError
,
[1]
,
[2]
,
[3]
info() (imagedata.transports.abstracttransport.AbstractTransport method)
(imagedata.transports.dicomtransport.DicomTransport method)
(imagedata.transports.filetransport.FileTransport method)
(imagedata.transports.xnattransport.XnatTransport method)
(src.imagedata.transports.abstracttransport.AbstractTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.filetransport.FileTransport method)
(src.imagedata.transports.xnattransport.XnatTransport method)
input_format (imagedata.Series property)
(src.imagedata.series.Series property)
input_order (imagedata.Series property)
(src.imagedata.series.Series property)
input_order_to_dirname_str() (in module src.imagedata.formats)
input_order_to_str() (in module src.imagedata.formats)
input_sort (imagedata.Series property)
(src.imagedata.series.Series property)
InputOrderAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
ipart() (in module src.imagedata.apps.Siemens.draw_antialiased)
iround() (in module src.imagedata.apps.Siemens.draw_antialiased)
is_file() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
isfile() (imagedata.transports.abstracttransport.AbstractTransport method)
(imagedata.transports.dicomtransport.DicomTransport method)
(imagedata.transports.filetransport.FileTransport method)
(imagedata.transports.xnattransport.XnatTransport method)
(src.imagedata.transports.abstracttransport.AbstractTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.filetransport.FileTransport method)
(src.imagedata.transports.xnattransport.XnatTransport method)
ITKPlugin (class in imagedata.formats.itkplugin)
(class in src.imagedata.formats.itkplugin)
K
keep_uid (src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
key_press() (src.imagedata.viewer.Viewer method)
L
laterality (imagedata.Series property)
(src.imagedata.series.Series property)
latest_roi_parameters (src.imagedata.series.Series attribute)
list_files() (in module src.imagedata.archives.zipfilearchive)
(in module tests.test_formats_itk)
(in module tests.test_formats_mat)
M
make_mask_in_slice() (in module src.imagedata.apps.Siemens.evidence2mask)
MatPlugin (class in imagedata.formats.matplugin)
(class in src.imagedata.formats.matplugin)
MatrixDimensionNotImplemented
,
[1]
Member (class in imagedata.archives.abstractarchive)
(class in src.imagedata.archives.abstractarchive)
mimetypes (imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
modality (imagedata.Series property)
(src.imagedata.series.Series property)
modify_window_level() (src.imagedata.viewer.Viewer method)
module
imagedata.apps.diffusion
imagedata.archives.abstractarchive
imagedata.archives.filesystemarchive
imagedata.archives.zipfilearchive
imagedata.axis
imagedata.cmdline
imagedata.formats.abstractplugin
imagedata.formats.dicomplugin
imagedata.formats.itkplugin
imagedata.formats.matplugin
imagedata.formats.niftiplugin
imagedata.header
imagedata.readdata
imagedata.transports.abstracttransport
imagedata.transports.dicomtransport
imagedata.transports.filetransport
imagedata.transports.xnattransport
src
src.imagedata
src.imagedata.apps
src.imagedata.apps.diffusion
src.imagedata.apps.Siemens
src.imagedata.apps.Siemens.draw_antialiased
src.imagedata.apps.Siemens.evidence2mask
src.imagedata.apps.Siemens.evidence_main
src.imagedata.apps.Siemens.ROI
src.imagedata.archives
src.imagedata.archives.abstractarchive
src.imagedata.archives.filesystemarchive
src.imagedata.archives.zipfilearchive
src.imagedata.axis
src.imagedata.cmdline
src.imagedata.collections
src.imagedata.formats
src.imagedata.formats.abstractplugin
src.imagedata.formats.dicomlib
src.imagedata.formats.dicomlib.uid
src.imagedata.formats.dicomplugin
src.imagedata.formats.itkplugin
src.imagedata.formats.matplugin
src.imagedata.formats.niftiplugin
src.imagedata.header
src.imagedata.image_data
src.imagedata.list_plugins
src.imagedata.readdata
src.imagedata.series
src.imagedata.transports
src.imagedata.transports.abstracttransport
src.imagedata.transports.dicomtransport
src.imagedata.transports.filetransport
src.imagedata.transports.xnattransport
src.imagedata.viewer
tests
tests.compare_headers
tests.context
tests.test_archive_file
tests.test_archive_zip
tests.test_axis
tests.test_formats_dicom
tests.test_formats_dicom_color
tests.test_formats_dicom_template
tests.test_formats_dicom_zip
tests.test_formats_itk
tests.test_formats_itk_template
tests.test_formats_itk_zip
tests.test_formats_mat
tests.test_formats_mat_zip
tests.test_formats_nifti
tests.test_formats_nifti_zip
tests.test_series
tests.test_transport_dicomtransport
tests.test_transport_filetransport
tests.test_version
MultipleVariablesInMatlabFile
,
[1]
MyPolygonSelector (class in src.imagedata.viewer)
N
name (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.formats.abstractplugin.AbstractPlugin property)
(imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
(src.imagedata.collections.Cohort attribute)
(src.imagedata.collections.Patient attribute)
(src.imagedata.collections.Study attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin property)
(src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
(src.imagedata.formats.itkplugin.ITKPlugin attribute)
(src.imagedata.formats.matplugin.MatPlugin attribute)
(src.imagedata.formats.niftiplugin.NiftiPlugin attribute)
(src.imagedata.series.Series attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
new_uid() (imagedata.header.Header method)
(src.imagedata.header.Header method)
NiftiPlugin (class in imagedata.formats.niftiplugin)
(class in src.imagedata.formats.niftiplugin)
NoArchiveError
,
[1]
NoDICOMAttributes
,
[1]
NoOtherInstance
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
normalize_window() (src.imagedata.viewer.Viewer method)
NoSuchFile
,
[1]
NotImageError
NoTransportError
,
[1]
NotTimeOrder
O
on_copy() (src.imagedata.viewer.Viewer method)
on_motion() (src.imagedata.viewer.Viewer method)
on_paste() (src.imagedata.viewer.Viewer method)
on_press() (src.imagedata.viewer.Viewer method)
on_release() (src.imagedata.viewer.Viewer method)
onselect() (src.imagedata.viewer.Viewer method)
open() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(imagedata.transports.abstracttransport.AbstractTransport method)
(imagedata.transports.dicomtransport.DicomTransport method)
(imagedata.transports.filetransport.FileTransport method)
(imagedata.transports.xnattransport.XnatTransport method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.transports.abstracttransport.AbstractTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.filetransport.FileTransport method)
(src.imagedata.transports.xnattransport.XnatTransport method)
orientation (imagedata.Series property)
(src.imagedata.series.Series property)
OutputFormatAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
P
Patient (class in imagedata)
(class in src.imagedata.collections)
patientBirthDate (imagedata.Series property)
(src.imagedata.series.Series property)
patientID (imagedata.Series property)
(src.imagedata.series.Series property)
patientName (imagedata.Series property)
(src.imagedata.series.Series property)
patientPosition (imagedata.Series property)
(src.imagedata.series.Series property)
photometricInterpretation (imagedata.Series property)
(src.imagedata.series.Series property)
plot() (in module src.imagedata.apps.Siemens.draw_antialiased)
plugin_type (src.imagedata.archives.abstractarchive.AbstractArchive attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport attribute)
point_in_polygon() (in module src.imagedata.apps.Siemens.draw_antialiased)
PolygonROI (class in src.imagedata.apps.Siemens.ROI)
pretty_datetime() (src.imagedata.viewer.Viewer method)
pretty_tag_value() (in module src.imagedata.viewer)
print_statistics() (in module src.imagedata.image_data)
process_member() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
protocolName (imagedata.Series property)
(src.imagedata.series.Series property)
R
read() (imagedata.formats.abstractplugin.AbstractPlugin method)
(imagedata.formats.dicomplugin.DICOMPlugin method)
(in module imagedata.readdata)
(in module src.imagedata.readdata)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
read_files() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
ReadOnlyError
,
[1]
removePrivateTags() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
replace_geometry_attributes() (imagedata.formats.abstractplugin.AbstractPlugin static method)
(src.imagedata.formats.abstractplugin.AbstractPlugin static method)
rfpart() (in module src.imagedata.apps.Siemens.draw_antialiased)
ROI (class in src.imagedata.apps.Siemens.ROI)
root (src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
RootDoesNotExist
RootIsNotDirectory
rows (imagedata.Series property)
(src.imagedata.series.Series property)
S
schemes (imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
scroll() (src.imagedata.viewer.Viewer method)
scroll_all_data() (src.imagedata.viewer.Viewer method)
scroll_data() (src.imagedata.viewer.Viewer method)
Series (class in imagedata)
(class in src.imagedata.series)
seriesDate (imagedata.Series property)
(src.imagedata.series.Series property)
seriesDescription (imagedata.Series property)
(src.imagedata.series.Series property)
seriesInstanceUID (imagedata.Series property)
(src.imagedata.series.Series property)
seriesNumber (imagedata.Series property)
(src.imagedata.series.Series property)
seriesTime (imagedata.Series property)
(src.imagedata.series.Series property)
set_default_values() (imagedata.header.Header method)
(src.imagedata.header.Header method)
set_default_viewport() (imagedata.viewer.Viewer method)
(src.imagedata.viewer.Viewer method)
set_direction_from_dicom_header() (src.imagedata.formats.itkplugin.ITKPlugin method)
set_direction_from_transformation_matrix() (src.imagedata.formats.itkplugin.ITKPlugin method)
setDicomAttribute() (imagedata.formats.dicomplugin.DICOMPlugin method)
(imagedata.Series method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.series.Series method)
setUp() (tests.test_archive_file.TestArchiveFile method)
(tests.test_archive_zip.TestArchiveZip method)
(tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_dicom.TestDicomSlicing method)
(tests.test_formats_dicom.TestDicomZipPlugin method)
(tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_color.TestDicomColor method)
(tests.test_formats_dicom_template.TestDicomGeometryTemplate method)
(tests.test_formats_dicom_template.TestDicomTemplate method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_dicom_zip.TestDicomZipWrite method)
(tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_itk.TestWritePluginITKSlice method)
(tests.test_formats_itk.TestWritePluginItkTag method)
(tests.test_formats_itk_template.TestItkTemplate method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_itk_zip.TestItkZipWrite method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_mat.Test4DMatPlugin method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_mat_zip.TestMatZipWrite method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
(tests.test_formats_nifti.Test4DNIfTIPlugin method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
(tests.test_formats_nifti_zip.TestNiftiZipWrite method)
(tests.test_transport_dicomtransport.TestDicomTransport method)
(tests.test_transport_filetransport.TestFiletransport method)
setupDicomSCP() (tests.test_transport_dicomtransport.TestDicomTransport method)
shape (imagedata.Series property)
(src.imagedata.series.Series property)
shape_to_str() (in module src.imagedata.formats)
ShouldHaveFailed
,
[1]
show() (imagedata.Series method)
(in module src.imagedata.image_data)
(src.imagedata.series.Series method)
(src.imagedata.viewer.Viewer method)
simulateAffine() (src.imagedata.formats.dicomplugin.DICOMPlugin method)
slice (src.imagedata.axis.UniformAxis property)
sliceLocations (imagedata.Series property)
(src.imagedata.series.Series property)
slices (imagedata.Series property)
(src.imagedata.series.Series property)
smallint (src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
SOPClassUID (imagedata.Series property)
(src.imagedata.series.Series property)
SOPInstanceUIDNotFound
SOPInstanceUIDs (imagedata.Series property)
(src.imagedata.series.Series property)
sort_images() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
sort_on (imagedata.Series property)
(src.imagedata.series.Series property)
sort_on_to_str() (in module src.imagedata.formats)
sorted_plugins_dicom_first() (in module imagedata.readdata)
(in module src.imagedata.readdata)
SortOnAction (class in imagedata.cmdline)
(class in src.imagedata.cmdline)
spacing (imagedata.Series property)
(src.imagedata.series.Series property)
src
module
src.imagedata
module
src.imagedata.apps
module
src.imagedata.apps.diffusion
module
src.imagedata.apps.Siemens
module
src.imagedata.apps.Siemens.draw_antialiased
module
src.imagedata.apps.Siemens.evidence2mask
module
src.imagedata.apps.Siemens.evidence_main
module
src.imagedata.apps.Siemens.ROI
module
src.imagedata.archives
module
src.imagedata.archives.abstractarchive
module
src.imagedata.archives.filesystemarchive
module
src.imagedata.archives.zipfilearchive
module
src.imagedata.axis
module
src.imagedata.cmdline
module
src.imagedata.collections
module
src.imagedata.formats
module
src.imagedata.formats.abstractplugin
module
src.imagedata.formats.dicomlib
module
src.imagedata.formats.dicomlib.uid
module
src.imagedata.formats.dicomplugin
module
src.imagedata.formats.itkplugin
module
src.imagedata.formats.matplugin
module
src.imagedata.formats.niftiplugin
module
src.imagedata.header
module
src.imagedata.image_data
module
src.imagedata.list_plugins
module
src.imagedata.readdata
module
src.imagedata.series
module
src.imagedata.transports
module
src.imagedata.transports.abstracttransport
module
src.imagedata.transports.dicomtransport
module
src.imagedata.transports.filetransport
module
src.imagedata.transports.xnattransport
module
src.imagedata.viewer
module
start_window_level() (src.imagedata.viewer.Viewer method)
statistics() (in module src.imagedata.image_data)
store() (imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
str_to_dtype() (in module imagedata.readdata)
(in module src.imagedata.formats)
(in module src.imagedata.readdata)
str_to_input_order() (in module src.imagedata.formats)
str_to_sort_on() (in module src.imagedata.formats)
Study (class in imagedata)
(class in src.imagedata.collections)
studyID (imagedata.Series property)
(src.imagedata.series.Series property)
studyInstanceUID (imagedata.Series property)
(src.imagedata.series.Series property)
T
tags (imagedata.Series property)
(src.imagedata.series.Series property)
tearDown() (tests.test_formats_dicom_template.TestDicomTemplate method)
(tests.test_transport_dicomtransport.TestDicomTransport method)
Test3DMatPlugin (class in tests.test_formats_mat)
Test3DNIfTIPlugin (class in tests.test_formats_nifti)
Test4DMatPlugin (class in tests.test_formats_mat)
Test4DNIfTIPlugin (class in tests.test_formats_nifti)
test_align_2d() (tests.test_series.TestSeries method)
test_align_3d() (tests.test_series.TestSeries method)
test_align_3d_few_slices_on_many() (tests.test_series.TestSeries method)
test_align_3d_on_4d() (tests.test_series.TestSeries method)
test_align_4d_on_3d() (tests.test_series.TestSeries method)
test_assign_slice() (tests.test_series.TestSeries method)
test_assign_slice_input_order() (tests.test_series.TestSeries method)
test_assign_slice_x() (tests.test_series.TestSeries method)
test_changed_uid() (tests.test_formats_dicom.TestDicomPlugin method)
test_compare_cor_hf() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_cor_oblique() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_cor_rl() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_qform_to_dicom() (tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_compare_sag_ap() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_sag_hf() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_sag_oblique() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_tra_oblique() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_compare_tra_rl() (tests.test_formats_nifti.TestReadNIfTIPlugin method)
test_copy_dicom_4D() (tests.test_formats_dicom.TestDicomPlugin method)
test_copy_series() (tests.test_series.TestSeries method)
test_copy_series2() (tests.test_series.TestSeries method)
test_cor_hf() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_cor_oblique() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_cor_rl() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_create_series() (tests.test_series.TestSeries method)
test_create_series_1() (tests.test_series.TestSeries method)
test_create_series_tuple_1D() (tests.test_series.TestSeries method)
test_cross_talk() (tests.test_series.TestSeries method)
test_cross_talk_2() (tests.test_series.TestSeries method)
test_cross_talk_3() (tests.test_series.TestSeries method)
test_cross_talk_dicom_series_template() (tests.test_series.TestSeries method)
test_cross_talk_series_ref() (tests.test_series.TestSeries method)
test_cross_talk_series_template() (tests.test_series.TestSeries method)
test_cross_talk_spacing() (tests.test_series.TestSeries method)
test_cross_talk_wl() (tests.test_series.TestSeries method)
test_cross_talk_wl_ref() (tests.test_series.TestSeries method)
test_dicom_geometry_cmdline() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_geometry_prog() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_plugin() (tests.test_formats_dicom.TestDicomPlugin method)
test_dicom_temp_slice() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_tempgeom_cmdline() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_tempgeom_prog() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_template_cmdline() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_template_prog() (tests.test_formats_dicom_template.TestDicomTemplate method)
test_dicom_too_few_template_slices() (tests.test_formats_dicom_template.TestDicomGeometryTemplate method)
test_dicom_too_few_template_tags() (tests.test_formats_dicom_template.TestDicomGeometryTemplate method)
test_dicom_too_many_template_slices() (tests.test_formats_dicom_template.TestDicomGeometryTemplate method)
test_dicom_too_many_template_tags() (tests.test_formats_dicom_template.TestDicomGeometryTemplate method)
test_ellipsis_first() (tests.test_series.TestSeries method)
test_ellipsis_middle() (tests.test_series.TestSeries method)
test_file_not_found() (tests.test_formats_itk.TestFileArchiveItk method)
test_fuse_mask_3d_bw_float() (tests.test_series.TestSeries method)
test_fuse_mask_3d_bw_uint8() (tests.test_series.TestSeries method)
test_fuse_mask_3d_rgb_float() (tests.test_series.TestSeries method)
test_fuse_mask_3d_rgb_uint8() (tests.test_series.TestSeries method)
test_fuse_mask_3d_variable() (tests.test_series.TestSeries method)
test_fuse_mask_lena() (tests.test_series.TestSeries method)
test_get_keyword() (tests.test_series.TestSeries method)
test_get_rgb_voxel() (tests.test_series.TestSeries method)
test_get_rgb_voxel_np() (tests.test_series.TestSeries method)
test_get_rgb_voxel_np_rgb() (tests.test_series.TestSeries method)
test_header_axes() (tests.test_series.TestSeries method)
test_increase_ndim() (tests.test_series.TestSeries method)
test_isfile() (tests.test_transport_filetransport.TestFiletransport method)
test_itk_geometry_cmdline() (tests.test_formats_itk_template.TestItkTemplate method)
test_itk_geometry_prog() (tests.test_formats_itk_template.TestItkTemplate method)
test_itk_plugin() (tests.test_formats_itk.TestFileArchiveItk method)
test_itk_tempgeom_cmdline() (tests.test_formats_itk_template.TestItkTemplate method)
test_itk_tempgeom_prog() (tests.test_formats_itk_template.TestItkTemplate method)
test_itk_template_cmdline() (tests.test_formats_itk_template.TestItkTemplate method)
test_itk_template_prog() (tests.test_formats_itk_template.TestItkTemplate method)
test_mat_plugin() (tests.test_formats_mat.Test3DMatPlugin method)
test_max() (tests.test_series.TestSeries method)
test_mimetype() (tests.test_archive_file.TestArchiveFile method)
(tests.test_archive_zip.TestArchiveZip method)
test_multiple_ellipses() (tests.test_series.TestSeries method)
test_new_archive() (tests.test_archive_file.TestArchiveFile method)
(tests.test_archive_zip.TestArchiveZip method)
test_nifti_plugin() (tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_numpy_mask() (tests.test_series.TestSeries method)
test_open_file() (tests.test_transport_filetransport.TestFiletransport method)
test_open_new() (tests.test_transport_filetransport.TestFiletransport method)
test_open_nonexist() (tests.test_transport_filetransport.TestFiletransport method)
test_open_nonexist_dir() (tests.test_transport_filetransport.TestFiletransport method)
test_print_header() (tests.test_series.TestSeries method)
test_qform_3D() (tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_read_2D() (tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_mat.Test3DMatPlugin method)
test_read_3d_mat_no_opt() (tests.test_formats_mat.Test3DMatPlugin method)
test_read_3d_nifti_no_opt() (tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_read_all_files() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
test_read_auto_time() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_auto_volume() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_dicom_3D_no_opt() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_dicom_4D() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_dicom_4D_wrong_order() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_dicom_color() (tests.test_formats_dicom_color.TestDicomColor method)
test_read_dicom_not_DWI() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
test_read_dicom_not_DWI_no_CSA() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
test_read_dicom_user_defined_TI() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_one_file() (tests.test_archive_file.TestArchiveFile method)
test_read_single_directory() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
test_read_single_directory_headers_only() (tests.test_formats_dicom.TestDicomPlugin method)
test_read_single_file() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
test_read_single_file_relative() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
test_read_single_file_wildcard() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat_zip.TestMatZipRead method)
(tests.test_formats_nifti_zip.TestNiftiZipRead method)
test_read_two_directories() (tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
test_read_two_files() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_dicom.TestWriteZipArchiveDicom method)
(tests.test_formats_dicom.TestZipArchiveDicom method)
(tests.test_formats_dicom_zip.TestDicomZipRead method)
(tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_itk_zip.TestItkZipRead method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_read_two_files2() (tests.test_formats_dicom_zip.TestDicomZipRead method)
test_readfile() (tests.test_transport_filetransport.TestFiletransport method)
test_repr() (tests.test_series.TestSeries method)
test_repr_vol() (tests.test_series.TestSeries method)
test_sag_ap() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_sag_hf() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_sag_oblique() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_set_axes() (tests.test_series.TestSeries method)
test_set_incorrect_slice_locations() (tests.test_series.TestSeries method)
test_set_variable_slice_locations() (tests.test_series.TestSeries method)
test_slice_ellipsis_first() (tests.test_formats_dicom.TestDicomSlicing method)
test_slice_ellipsis_last() (tests.test_formats_dicom.TestDicomSlicing method)
test_slice_ellipsis_middle() (tests.test_formats_dicom.TestDicomSlicing method)
test_slice_inplane() (tests.test_formats_dicom.TestDicomSlicing method)
test_slice_time_z() (tests.test_formats_dicom.TestDicomSlicing method)
test_slice_z() (tests.test_formats_dicom.TestDicomSlicing method)
test_slicing_dim() (tests.test_series.TestSeries method)
test_slicing_t() (tests.test_series.TestSeries method)
test_slicing_t_drop() (tests.test_series.TestSeries method)
test_slicing_t_neg() (tests.test_series.TestSeries method)
test_slicing_x() (tests.test_series.TestSeries method)
test_slicing_x_neg() (tests.test_series.TestSeries method)
test_slicing_y() (tests.test_series.TestSeries method)
test_slicing_y_neg() (tests.test_series.TestSeries method)
test_slicing_z() (tests.test_series.TestSeries method)
test_slicing_z_neg() (tests.test_series.TestSeries method)
test_str() (tests.test_series.TestSeries method)
test_subtract_series() (tests.test_series.TestSeries method)
test_sum_with_series_mask() (tests.test_series.TestSeries method)
test_tra_oblique() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_tra_rl() (tests.test_formats_nifti.TestWriteNIfTIPlugin method)
test_transport_cget_series() (tests.test_transport_dicomtransport.TestDicomTransport method)
test_transport_single_image() (tests.test_transport_dicomtransport.TestDicomTransport method)
test_transport_single_image_calling_aet() (tests.test_transport_dicomtransport.TestDicomTransport method)
test_transport_walk() (tests.test_transport_dicomtransport.TestDicomTransport method)
test_uniform_axis() (tests.test_axis.TestAxis method)
test_uniform_length_axis() (tests.test_axis.TestAxis method)
test_uniform_length_axis_step2() (tests.test_axis.TestAxis method)
test_unknown_mimetype() (tests.test_archive_file.TestArchiveFile method)
(tests.test_archive_zip.TestArchiveZip method)
test_unknown_url() (tests.test_archive_file.TestArchiveFile method)
(tests.test_archive_zip.TestArchiveZip method)
test_variable_axis() (tests.test_axis.TestAxis method)
test_variable_axis2() (tests.test_axis.TestAxis method)
test_variable_axis_rgb() (tests.test_axis.TestAxis method)
test_verify_correct_4D() (tests.test_formats_dicom.TestDicomPlugin method)
test_verify_correct_slice() (tests.test_formats_dicom.TestDicomPlugin method)
test_verify_correct_volume() (tests.test_formats_dicom.TestDicomPlugin method)
test_verify_correct_volume_no_slicelocation() (tests.test_formats_dicom.TestDicomPlugin method)
test_version() (tests.test_version.TestVersion method)
test_vertices_from_3d_grid() (tests.test_series.TestSeries method)
test_walk() (tests.test_transport_filetransport.TestFiletransport method)
test_write_3d_itk() (tests.test_formats_itk.TestWritePluginITKSlice method)
test_write_3d_itk_no_opt() (tests.test_formats_itk.TestWritePluginITKSlice method)
test_write_3d_mat() (tests.test_formats_mat.Test3DMatPlugin method)
test_write_3d_mat_no_opt() (tests.test_formats_mat.Test3DMatPlugin method)
test_write_3d_nifti_no_opt() (tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_write_3d_single_file() (tests.test_formats_itk.TestFileArchiveItk method)
test_write_4d_itk() (tests.test_formats_itk.TestWritePluginITKSlice method)
(tests.test_formats_itk.TestWritePluginItkTag method)
test_write_4d_mat() (tests.test_formats_mat.Test4DMatPlugin method)
test_write_4d_nifti_dwi() (tests.test_formats_nifti.Test4DNIfTIPlugin method)
test_write_4d_nifti_time() (tests.test_formats_nifti.Test4DNIfTIPlugin method)
test_write_4d_single_directory() (tests.test_formats_itk.TestFileArchiveItk method)
test_write_4d_single_directory_explicit() (tests.test_formats_itk.TestFileArchiveItk method)
test_write_all_files() (tests.test_formats_dicom_zip.TestDicomZipWrite method)
(tests.test_formats_itk_zip.TestItkZipWrite method)
(tests.test_formats_mat_zip.TestMatZipWrite method)
test_write_dicom() (tests.test_formats_nifti.TestNIfTIPluginWrite method)
test_write_dicom_4D() (tests.test_formats_dicom.TestDicomPlugin method)
test_write_dicom_4D_no_opt() (tests.test_formats_dicom.TestDicomPlugin method)
test_write_dicom_color() (tests.test_formats_dicom_color.TestDicomColor method)
test_write_float() (tests.test_formats_dicom.TestDicomPlugin method)
test_write_keep_uid() (tests.test_formats_dicom.TestDicomPlugin method)
test_write_ndarray() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_itk.TestFileArchiveItk method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_write_no_keep_uid() (tests.test_formats_dicom.TestDicomPlugin method)
test_write_single_directory() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_mat.Test3DMatPlugin method)
test_write_single_file() (tests.test_formats_dicom.TestDicomPlugin method)
(tests.test_formats_dicom_zip.TestDicomZipWrite method)
(tests.test_formats_itk_zip.TestItkZipWrite method)
(tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_mat_zip.TestMatZipWrite method)
(tests.test_formats_nifti_zip.TestNiftiZipWrite method)
test_write_then_read() (tests.test_transport_filetransport.TestFiletransport method)
test_write_zip() (tests.test_formats_dicom.TestDicomZipPlugin method)
test_zeros_like() (tests.test_series.TestSeries method)
test_zipread_all_files() (tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_zipread_single_directory() (tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_zipread_single_file() (tests.test_formats_mat.Test3DMatPlugin method)
(tests.test_formats_nifti.Test3DNIfTIPlugin method)
test_zipread_single_file_relative() (tests.test_formats_mat.Test3DMatPlugin method)
test_zipread_single_file_wildcard() (tests.test_formats_mat.Test3DMatPlugin method)
TestArchiveFile (class in tests.test_archive_file)
TestArchiveZip (class in tests.test_archive_zip)
TestAxis (class in tests.test_axis)
TestDicomColor (class in tests.test_formats_dicom_color)
TestDicomGeometryTemplate (class in tests.test_formats_dicom_template)
TestDicomPlugin (class in tests.test_formats_dicom)
TestDicomSlicing (class in tests.test_formats_dicom)
TestDicomTemplate (class in tests.test_formats_dicom_template)
TestDicomTransport (class in tests.test_transport_dicomtransport)
TestDicomZipPlugin (class in tests.test_formats_dicom)
TestDicomZipRead (class in tests.test_formats_dicom_zip)
TestDicomZipWrite (class in tests.test_formats_dicom_zip)
TestFileArchiveItk (class in tests.test_formats_itk)
TestFiletransport (class in tests.test_transport_filetransport)
TestItkTemplate (class in tests.test_formats_itk_template)
TestItkZipRead (class in tests.test_formats_itk_zip)
TestItkZipWrite (class in tests.test_formats_itk_zip)
TestMatZipRead (class in tests.test_formats_mat_zip)
TestMatZipWrite (class in tests.test_formats_mat_zip)
TestNIfTIPluginWrite (class in tests.test_formats_nifti)
TestNiftiZipRead (class in tests.test_formats_nifti_zip)
TestNiftiZipWrite (class in tests.test_formats_nifti_zip)
TestReadNIfTIPlugin (class in tests.test_formats_nifti)
tests
module
tests.compare_headers
module
tests.context
module
tests.test_archive_file
module
tests.test_archive_zip
module
tests.test_axis
module
tests.test_formats_dicom
module
tests.test_formats_dicom_color
module
tests.test_formats_dicom_template
module
tests.test_formats_dicom_zip
module
tests.test_formats_itk
module
tests.test_formats_itk_template
module
tests.test_formats_itk_zip
module
tests.test_formats_mat
module
tests.test_formats_mat_zip
module
tests.test_formats_nifti
module
tests.test_formats_nifti_zip
module
tests.test_series
module
tests.test_transport_dicomtransport
module
tests.test_transport_filetransport
module
tests.test_version
module
TestSeries (class in tests.test_series)
TestVersion (class in tests.test_version)
TestWriteNIfTIPlugin (class in tests.test_formats_nifti)
TestWritePluginITKSlice (class in tests.test_formats_itk)
TestWritePluginItkTag (class in tests.test_formats_itk)
TestWriteZipArchiveDicom (class in tests.test_formats_dicom)
TestZipArchiveDicom (class in tests.test_formats_dicom)
timeline (imagedata.Series property)
(src.imagedata.series.Series property)
timeline() (in module src.imagedata.image_data)
to_channels() (imagedata.Series method)
(src.imagedata.series.Series method)
to_localfile() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
to_rgb() (imagedata.Series method)
(src.imagedata.series.Series method)
toggle_button() (src.imagedata.viewer.Viewer method)
toggle_hide() (src.imagedata.viewer.Viewer method)
transform_data_points_to_voxels() (in module src.imagedata.apps.Siemens.evidence2mask)
(src.imagedata.apps.Siemens.ROI.ROI static method)
transformationMatrix (imagedata.Series property)
(src.imagedata.series.Series property)
transport (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.archives.filesystemarchive.FilesystemArchive property)
(imagedata.archives.zipfilearchive.ZipfileArchive property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive property)
(src.imagedata.archives.zipfilearchive.ZipfileArchive property)
Transport() (in module src.imagedata.transports)
TransportPluginNotFound
U
uid_append_instance() (in module src.imagedata.formats.dicomlib.uid)
UnevenSlicesError
,
[1]
UniformAxis (class in imagedata.axis)
(class in src.imagedata.axis)
UniformLengthAxis (class in imagedata.axis)
(class in src.imagedata.axis)
UnknownInputError
UnknownOptionType
,
[1]
,
[2]
UnknownTag
,
[1]
,
[2]
update() (src.imagedata.viewer.Viewer method)
update_tag() (src.imagedata.viewer.Viewer method)
upper_left_text() (imagedata.viewer.Viewer method)
(src.imagedata.viewer.Viewer method)
upper_right_text() (imagedata.viewer.Viewer method)
(src.imagedata.viewer.Viewer method)
url (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.formats.abstractplugin.AbstractPlugin property)
(imagedata.formats.niftiplugin.NiftiPlugin attribute)
(imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
(src.imagedata.collections.Cohort attribute)
(src.imagedata.collections.Patient attribute)
(src.imagedata.collections.Study attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin property)
(src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
(src.imagedata.formats.itkplugin.ITKPlugin attribute)
(src.imagedata.formats.matplugin.MatPlugin attribute)
(src.imagedata.formats.niftiplugin.NiftiPlugin attribute)
(src.imagedata.series.Series attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
use_query() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
V
ValueErrorWrapperPrecisionError
,
[1]
VariableAxis (class in imagedata.axis)
(class in src.imagedata.axis)
verify_all_voxels_in_slice() (src.imagedata.apps.Siemens.ROI.ROI method)
version (imagedata.archives.abstractarchive.AbstractArchive property)
(imagedata.formats.abstractplugin.AbstractPlugin property)
(imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.archives.abstractarchive.AbstractArchive property)
(src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)
(src.imagedata.archives.zipfilearchive.ZipfileArchive attribute)
(src.imagedata.collections.Cohort attribute)
(src.imagedata.collections.Patient attribute)
(src.imagedata.collections.Study attribute)
(src.imagedata.formats.abstractplugin.AbstractPlugin property)
(src.imagedata.formats.dicomplugin.DICOMPlugin attribute)
(src.imagedata.formats.itkplugin.ITKPlugin attribute)
(src.imagedata.formats.matplugin.MatPlugin attribute)
(src.imagedata.formats.niftiplugin.NiftiPlugin attribute)
(src.imagedata.series.Series attribute)
(src.imagedata.transports.abstracttransport.AbstractTransport property)
(src.imagedata.transports.dicomtransport.DicomTransport attribute)
(src.imagedata.transports.filetransport.FileTransport attribute)
(src.imagedata.transports.xnattransport.XnatTransport attribute)
vertices_from_grid() (imagedata.Series method)
(src.imagedata.series.Series method)
Viewer (class in imagedata.viewer)
(class in src.imagedata.viewer)
viewer (src.imagedata.series.Series attribute)
viewport_advance() (src.imagedata.viewer.Viewer method)
W
walk() (imagedata.transports.abstracttransport.AbstractTransport method)
(imagedata.transports.dicomtransport.DicomTransport method)
(imagedata.transports.filetransport.FileTransport method)
(imagedata.transports.xnattransport.XnatTransport method)
(src.imagedata.transports.abstracttransport.AbstractTransport method)
(src.imagedata.transports.dicomtransport.DicomTransport method)
(src.imagedata.transports.filetransport.FileTransport method)
(src.imagedata.transports.xnattransport.XnatTransport method)
windowCenter (imagedata.Series property)
(src.imagedata.series.Series property)
windowWidth (imagedata.Series property)
(src.imagedata.series.Series property)
write() (imagedata.Cohort method)
(imagedata.Patient method)
(imagedata.Series method)
(imagedata.Study method)
(in module imagedata.readdata)
(in module src.imagedata.readdata)
(src.imagedata.collections.Cohort method)
(src.imagedata.collections.Patient method)
(src.imagedata.collections.Study method)
(src.imagedata.series.Series method)
write_3d_numpy() (imagedata.formats.abstractplugin.AbstractPlugin method)
(imagedata.formats.dicomplugin.DICOMPlugin method)
(imagedata.formats.itkplugin.ITKPlugin method)
(imagedata.formats.matplugin.MatPlugin method)
(imagedata.formats.niftiplugin.NiftiPlugin method)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.itkplugin.ITKPlugin method)
(src.imagedata.formats.matplugin.MatPlugin method)
(src.imagedata.formats.niftiplugin.NiftiPlugin method)
write_4d_numpy() (imagedata.formats.abstractplugin.AbstractPlugin method)
(imagedata.formats.dicomplugin.DICOMPlugin method)
(imagedata.formats.itkplugin.ITKPlugin method)
(imagedata.formats.matplugin.MatPlugin method)
(imagedata.formats.niftiplugin.NiftiPlugin method)
(src.imagedata.formats.abstractplugin.AbstractPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.itkplugin.ITKPlugin method)
(src.imagedata.formats.matplugin.MatPlugin method)
(src.imagedata.formats.niftiplugin.NiftiPlugin method)
write_enhanced() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
write_numpy_itk() (imagedata.formats.itkplugin.ITKPlugin method)
(src.imagedata.formats.itkplugin.ITKPlugin method)
write_numpy_nifti() (imagedata.formats.niftiplugin.NiftiPlugin static method)
(src.imagedata.formats.niftiplugin.NiftiPlugin static method)
write_slice() (imagedata.formats.dicomplugin.DICOMPlugin method)
(src.imagedata.formats.dicomplugin.DICOMPlugin method)
writedata() (imagedata.archives.abstractarchive.AbstractArchive method)
(imagedata.archives.filesystemarchive.FilesystemArchive method)
(imagedata.archives.zipfilearchive.ZipfileArchive method)
(src.imagedata.archives.abstractarchive.AbstractArchive method)
(src.imagedata.archives.filesystemarchive.FilesystemArchive method)
(src.imagedata.archives.zipfilearchive.ZipfileArchive method)
WriteFileIO (class in imagedata.archives.zipfilearchive)
(class in src.imagedata.archives.zipfilearchive)
WriteMultipleArchives
,
[1]
WriteNotImplemented
WriteOnFile
,
[1]
X
XnatTransport (class in imagedata.transports.xnattransport)
(class in src.imagedata.transports.xnattransport)
xyz_to_zyx() (in module src.imagedata.apps.Siemens.evidence2mask)
Z
ZipfileArchive (class in imagedata.archives.zipfilearchive)
(class in src.imagedata.archives.zipfilearchive)
Read the Docs
v: 3.4.0
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