src package

Subpackages

• src.imagedata package
  • Subpackages
    • src.imagedata.apps package
      • Subpackages
      • Submodules
      • src.imagedata.apps.diffusion module
      • Module contents
    • src.imagedata.archives package
      • Submodules
      • src.imagedata.archives.abstractarchive module
      • src.imagedata.archives.filesystemarchive module
      • src.imagedata.archives.zipfilearchive module
      • Module contents
    • src.imagedata.formats package
      • Subpackages
      • Submodules
      • src.imagedata.formats.abstractplugin module
      • src.imagedata.formats.dicomplugin module
      • src.imagedata.formats.itkplugin module
      • src.imagedata.formats.matplugin module
      • src.imagedata.formats.niftiplugin module
      • Module contents
    • src.imagedata.transports package
      • Submodules
      • src.imagedata.transports.abstracttransport module
      • src.imagedata.transports.dicomtransport module
      • src.imagedata.transports.filetransport module
      • src.imagedata.transports.xnattransport module
      • Module contents
  • Submodules
  • src.imagedata.axis module
    • Axis
      • Axis.name
    • UniformAxis
      • UniformAxis.copy()
      • UniformAxis.slice
      • UniformAxis.start
      • UniformAxis.step
      • UniformAxis.stop
    • UniformLengthAxis
      • UniformLengthAxis.copy()
      • UniformLengthAxis.n
    • VariableAxis
      • VariableAxis.copy()
      • VariableAxis.step
      • VariableAxis.values
  • src.imagedata.cmdline module
    • CommaSepAction
    • DictAction
    • DtypeAction
    • InputOrderAction
    • OutputFormatAction
    • SortOnAction
    • add_argparse_options()
  • src.imagedata.collections module
    • ClinicalTrialSubject
    • Cohort
      • Cohort.authors
      • Cohort.description
      • Cohort.name
      • Cohort.url
      • Cohort.version
      • Cohort.write()
    • GeneralEquipment
    • IndexedDict
      • IndexedDict.update()
    • Patient
      • Patient.authors
      • Patient.description
      • Patient.name
      • Patient.url
      • Patient.version
      • Patient.write()
    • Study
      • Study.authors
      • Study.description
      • Study.name
      • Study.url
      • Study.version
      • Study.write()
    • UnknownOptionType
  • src.imagedata.header module
    • Header
      • Header.add_geometry()
      • Header.add_template()
      • Header.empty_ds()
      • Header.find_axis()
      • Header.new_uid()
      • Header.set_default_values()
      • Header.shape
  • src.imagedata.image_data module
    • calculator()
    • conversion()
    • dump()
    • image_list()
    • print_statistics()
    • show()
    • statistics()
    • timeline()
  • src.imagedata.list_plugins module
  • src.imagedata.readdata module
    • NoArchiveError
    • NoTransportError
    • UnknownOptionType
    • read()
    • sorted_plugins_dicom_first()
    • str_to_dtype()
    • write()
  • src.imagedata.series module
    • DoNotSetSlicesError
    • MultipleSeriesError
    • Series
      • Series.SOPClassUID
      • Series.SOPInstanceUIDs
      • Series.accessionNumber
      • Series.align()
      • Series.authors
      • Series.axes
      • Series.bodyPartExamined
      • Series.bvalues
      • Series.calculate_clip_range()
      • Series.color
      • Series.colormap
      • Series.colormap_label
      • Series.colormap_norm
      • Series.columns
      • Series.description
      • Series.dicomTemplate
      • Series.find_axis()
      • Series.frameOfReferenceUID
      • Series.fuse_mask()
      • Series.getDicomAttribute()
      • Series.getPositionForVoxel()
      • Series.getVoxelForPosition()
      • Series.get_roi()
      • Series.get_roi_mask()
      • Series.get_slice_axis()
      • Series.get_tag_axis()
      • Series.get_transformation_components_xyz()
      • Series.imagePositions
      • Series.imageType
      • Series.input_format
      • Series.input_order
      • Series.input_sort
      • Series.laterality
      • Series.latest_roi_parameters
      • Series.modality
      • Series.name
      • Series.orientation
      • Series.patientBirthDate
      • Series.patientID
      • Series.patientName
      • Series.patientPosition
      • Series.photometricInterpretation
      • Series.protocolName
      • Series.rows
      • Series.seriesDate
      • Series.seriesDescription
      • Series.seriesInstanceUID
      • Series.seriesNumber
      • Series.seriesTime
      • Series.setDicomAttribute()
      • Series.shape
      • Series.show()
      • Series.sliceLocations
      • Series.slices
      • Series.sort_on
      • Series.spacing
      • Series.studyID
      • Series.studyInstanceUID
      • Series.tags
      • Series.timeline
      • Series.to_channels()
      • Series.to_rgb()
      • Series.transformationMatrix
      • Series.url
      • Series.version
      • Series.vertices_from_grid()
      • Series.viewer
      • Series.windowCenter
      • Series.windowWidth
      • Series.write()
  • src.imagedata.viewer module
    • MyPolygonSelector
    • Viewer
      • Viewer.advance_data()
      • Viewer.connect()
      • Viewer.connect_draw()
      • Viewer.disconnect()
      • Viewer.disconnect_draw()
      • Viewer.end_window_level()
      • Viewer.find_image_from_event()
      • Viewer.find_viewport_from_event()
      • Viewer.get_roi()
      • Viewer.key_press()
      • Viewer.modify_window_level()
      • Viewer.normalize_window()
      • Viewer.on_copy()
      • Viewer.on_motion()
      • Viewer.on_paste()
      • Viewer.on_press()
      • Viewer.on_release()
      • Viewer.onselect()
      • Viewer.pretty_datetime()
      • Viewer.scroll()
      • Viewer.scroll_all_data()
      • Viewer.scroll_data()
      • Viewer.set_default_viewport()
      • Viewer.show()
      • Viewer.start_window_level()
      • Viewer.toggle_button()
      • Viewer.toggle_hide()
      • Viewer.update()
      • Viewer.update_tag()
      • Viewer.upper_left_text()
      • Viewer.upper_right_text()
      • Viewer.viewport_advance()
      • Viewer.viewport_set()
    • build_info()
    • default_layout()
    • get_level()
    • get_window_level()
    • grid_from_roi()
    • pretty_tag_value()
    • pretty_window_level()
  • Module contents

Module contents