Index

A

AbstractArchive (class in imagedata.archives.abstractarchive) (class in src.imagedata.archives.abstractarchive) AbstractTransport (class in imagedata.transports.abstracttransport) (class in src.imagedata.transports.abstracttransport) add_localfile() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) append() (imagedata.axis.UniformAxis method) (imagedata.axis.UniformLengthAxis method) (imagedata.axis.VariableAxis method)

ArchivePluginNotFound AssociationFailed, [1] AssociationNotEstablished, [1] authors (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

B

base (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.archives.filesystemarchive.FilesystemArchive property) (imagedata.archives.zipfilearchive.ZipfileArchive property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive property) (src.imagedata.archives.zipfilearchive.ZipfileArchive property)

basename() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method)

C

CannotSort close() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.WriteFileIO method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.WriteFileIO method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method)

construct_filename() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) copy() (imagedata.axis.UniformAxis method) (imagedata.axis.UniformLengthAxis method) (imagedata.axis.VariableAxis method)

D

description (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

DicomTransport (class in imagedata.transports.dicomtransport) (class in src.imagedata.transports.dicomtransport)

E

EmptyImageError exists() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method)

extensions (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)

F

FileAlreadyExistsError FilesystemArchive (class in imagedata.archives.filesystemarchive) (class in src.imagedata.archives.filesystemarchive) FileTransport (class in imagedata.transports.filetransport) (class in src.imagedata.transports.filetransport)

find_mimetype_plugin() (in module src.imagedata.archives) find_plugin() (in module src.imagedata.archives) (in module src.imagedata.formats) FormatPluginNotFound FunctionNotSupported

G

get_archiver_list() (in module src.imagedata.archives) get_plugins_list() (in module src.imagedata.formats) get_size() (in module src.imagedata.formats) get_transporter_list() (in module src.imagedata.transports) get_uid() (in module src.imagedata.formats) get_uid_for_storage_class() (in module src.imagedata.formats.dicomlib.uid) getmembers() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method)

getnames() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method)

I

imagedata.archives.abstractarchive module imagedata.archives.filesystemarchive module imagedata.archives.zipfilearchive module imagedata.axis module imagedata.readdata module imagedata.transports.abstracttransport module imagedata.transports.dicomtransport module imagedata.transports.filetransport module imagedata.transports.xnattransport module info() (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method)

is_file() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) isfile() (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method)

L

level (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute)

list_files() (in module src.imagedata.archives.zipfilearchive) local_file (src.imagedata.archives.zipfilearchive.WriteFileIO property)

M

Member (class in imagedata.archives.abstractarchive) (class in src.imagedata.archives.abstractarchive) mimetype (src.imagedata.transports.abstracttransport.AbstractTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute) mimetypes (imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) module imagedata.archives.abstractarchive imagedata.archives.filesystemarchive imagedata.archives.zipfilearchive imagedata.axis imagedata.readdata imagedata.transports.abstracttransport imagedata.transports.dicomtransport imagedata.transports.filetransport imagedata.transports.xnattransport src src.imagedata.archives src.imagedata.archives.abstractarchive src.imagedata.archives.filesystemarchive src.imagedata.archives.zipfilearchive src.imagedata.formats src.imagedata.formats.dicomlib src.imagedata.formats.dicomlib.uid src.imagedata.readdata src.imagedata.transports src.imagedata.transports.abstracttransport src.imagedata.transports.dicomtransport src.imagedata.transports.filetransport src.imagedata.transports.xnattransport tests tests.test_axis

N

name (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.abstractarchive.Member property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute) netloc (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

new_local_file() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) NoArchiveError, [1] NoOtherInstance, [1], [2], [3] NoSuchFile, [1] NotImageError NoTransportError, [1] NotTimeOrder

O

open() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method)

opts (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

P

path (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.archives.filesystemarchive.FilesystemArchive property) (imagedata.archives.zipfilearchive.ZipfileArchive property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive property) (src.imagedata.archives.zipfilearchive.ZipfileArchive property) (src.imagedata.transports.filetransport.FileTransport attribute)

plugin_type (src.imagedata.archives.abstractarchive.AbstractArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport attribute)

R

read() (in module imagedata.readdata) (in module src.imagedata.readdata) read_directory_only (src.imagedata.transports.xnattransport.XnatTransport attribute) ReadOnlyError, [1] root (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.archives.filesystemarchive.FilesystemArchive property) (imagedata.archives.zipfilearchive.ZipfileArchive property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive property) (src.imagedata.archives.zipfilearchive.ZipfileArchive property)

RootIsNotDirectory

S

schemes (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute) set_member_naming_scheme() (imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) shape_to_str() (in module src.imagedata.formats) SOPInstanceUIDNotFound sort_on_to_str() (in module src.imagedata.formats) sorted_plugins_dicom_first() (in module imagedata.readdata) (in module src.imagedata.readdata) src module src.imagedata.archives module src.imagedata.archives.abstractarchive module src.imagedata.archives.filesystemarchive module src.imagedata.archives.zipfilearchive module src.imagedata.formats module

src.imagedata.formats.dicomlib module src.imagedata.formats.dicomlib.uid module src.imagedata.readdata module src.imagedata.transports module src.imagedata.transports.abstracttransport module src.imagedata.transports.dicomtransport module src.imagedata.transports.filetransport module src.imagedata.transports.xnattransport module store() (imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) str_to_dtype() (in module imagedata.readdata) (in module src.imagedata.formats) (in module src.imagedata.readdata) str_to_sort_on() (in module src.imagedata.formats)

T

test_uniform_axis() (tests.test_axis.TestAxis method) test_uniform_length_axis() (tests.test_axis.TestAxis method) test_uniform_length_axis_step2() (tests.test_axis.TestAxis method) test_variable_axis() (tests.test_axis.TestAxis method) test_variable_axis2() (tests.test_axis.TestAxis method) test_variable_axis_rgb() (tests.test_axis.TestAxis method) TestAxis (class in tests.test_axis) tests module tests.test_axis module

to_localfile() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) to_namedtuple() (in module imagedata.axis) transport (imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.abstractarchive.AbstractArchive property) Transport() (in module src.imagedata.transports) TransportPluginNotFound

U

UniformAxis (class in imagedata.axis) UniformLengthAxis (class in imagedata.axis) UnknownInputError UnknownOptionType, [1] UnknownTag url (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

use_query() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method)

V

VariableAxis (class in imagedata.axis) version (imagedata.archives.abstractarchive.AbstractArchive property) (imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.archives.abstractarchive.AbstractArchive property) (src.imagedata.archives.filesystemarchive.FilesystemArchive attribute) (src.imagedata.archives.zipfilearchive.ZipfileArchive attribute) (src.imagedata.transports.abstracttransport.AbstractTransport property) (src.imagedata.transports.dicomtransport.DicomTransport attribute) (src.imagedata.transports.filetransport.FileTransport attribute) (src.imagedata.transports.xnattransport.XnatTransport attribute)

W

walk() (imagedata.transports.abstracttransport.AbstractTransport method) (imagedata.transports.dicomtransport.DicomTransport method) (imagedata.transports.filetransport.FileTransport method) (imagedata.transports.xnattransport.XnatTransport method) (src.imagedata.transports.abstracttransport.AbstractTransport method) (src.imagedata.transports.dicomtransport.DicomTransport method) (src.imagedata.transports.filetransport.FileTransport method) (src.imagedata.transports.xnattransport.XnatTransport method) write() (in module imagedata.readdata) (in module src.imagedata.readdata)

writedata() (imagedata.archives.abstractarchive.AbstractArchive method) (imagedata.archives.filesystemarchive.FilesystemArchive method) (imagedata.archives.zipfilearchive.ZipfileArchive method) (src.imagedata.archives.abstractarchive.AbstractArchive method) (src.imagedata.archives.filesystemarchive.FilesystemArchive method) (src.imagedata.archives.zipfilearchive.ZipfileArchive method) WriteFileIO (class in imagedata.archives.zipfilearchive) (class in src.imagedata.archives.zipfilearchive) WriteMultipleArchives, [1] WriteNotImplemented WriteOnFile, [1]

X

XnatTransport (class in imagedata.transports.xnattransport) (class in src.imagedata.transports.xnattransport)

Z

ZipfileArchive (class in imagedata.archives.zipfilearchive) (class in src.imagedata.archives.zipfilearchive)